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CNTN2 contactin 2 [ Pelecanus crispus (Dalmatian pelican) ]

Gene ID: 104031720, updated on 3-Aug-2024

Summary

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Gene symbol
CNTN2
Gene description
contactin 2
Locus tag
N334_05630
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelecanus crispus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Pelecanidae; Pelecanus
Orthologs
human mouse all
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Genomic context

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See CNTN2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM68737v1 (GCF_000687375.1) Unplaced Scaffold NW_009088381.1 (4898..21880)

NW_009088381.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009088381.1 Unplaced Scaffold Reference ASM68737v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-2
Names
Contactin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelecanus crispus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68737v1

Genomic

  1. NW_009088381.1 Reference ASM68737v1

    Range
    4898..21880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009483807.1 → XP_009482082.1  contactin-2

    UniProtKB/TrEMBL
    A0A091STN3
    Conserved Domains (10) summary
    cd04968
    Location:234 → 319
    Ig3_Contactin_like; Third Ig domain of contactin
    cd04969
    Location:428 → 500
    Ig5_Contactin_like; Fifth Ig domain of contactin
    cd05727
    Location:126 → 223
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05728
    Location:323 → 407
    Ig4_Contactin-2-like; Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05850
    Location:31 → 124
    Ig1_Contactin-2; First Ig domain of contactin-2
    smart00410
    Location:38 → 117
    IG_like; Immunoglobulin like
    cd00063
    Location:613 → 700
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:322 → 407
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:811 → 896
    fn3; Fibronectin type III domain
    cl11960
    Location:519 → 598
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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