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SGCG sarcoglycan gamma [ Nipponia nippon (crested ibis) ]

Gene ID: 104023034, updated on 3-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
Locus tag
Y956_13497
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998978.1 (3694958..3766809, complement)

NW_008998978.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 19 Neighboring gene sacsin molecular chaperone Neighboring gene fibroblast growth factor 9 Neighboring gene mitochondrial calcium uptake 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008998978.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
Gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998978.1 Reference ASM70822v1 Primary Assembly

    Range
    3694958..3766809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009476812.1 → XP_009475087.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_009475087.1

    UniProtKB/TrEMBL
    A0A091USD9
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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