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PLEC plectin [ Nipponia nippon (crested ibis) ]

Gene ID: 104018573, updated on 3-Aug-2024

Summary

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Gene symbol
PLEC
Gene description
plectin
Locus tag
Y956_05348
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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See PLEC in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008998361.1 (428698..461894, complement)

NW_008998361.1Genomic Context describing neighboring genes Neighboring gene epiplakin 1 Neighboring gene dystonin-like Neighboring gene lysine-rich arabinogalactan protein 19-like Neighboring gene myosin heavy chain IB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008998361.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_008998361.1 Reference ASM70822v1 Primary Assembly

    Range
    428698..461894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009471732.1 → XP_009470007.1  LOW QUALITY PROTEIN: plectin

    Conserved Domains (15) summary
    pfam05483
    Location:910 → 1464
    SCP-1; Synaptonemal complex protein 1 (SCP-1)
    cl14654
    Location:1773 → 1971
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    smart00250
    Location:3048 → 3084
    PLEC; Plectin repeat
    COG1842
    Location:1406 → 1607
    PspA; Phage shock protein A [Transcription, Signal transduction mechanisms]
    cd00014
    Location:43 → 145
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:488 → 677
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:160 → 258
    CH; Calponin homology (CH) domain
    pfam00681
    Location:2758 → 2799
    Plectin; Plectin repeat
    pfam01576
    Location:1516 → 2508
    Myosin_tail_1; Myosin tail
    pfam13863
    Location:2409 → 2509
    DUF4200; Domain of unknown function (DUF4200)
    pfam15035
    Location:2314 → 2467
    Rootletin; Ciliary rootlet component, centrosome cohesion
    cd16269
    Location:2273 → 2286
    GBP_C; coiled coil [structural motif]
    cl02488
    Location:1075 → 1235
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl20817
    Location:2176 → 2306
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl21478
    Location:1428 → 1508
    ATP-synt_B; ATP synthase B/B' CF(0)
Nucleotide Protein
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