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LOC104000550 polygalacturonase-like [ Musa acuminata AAA Group (dessert banana) ]

Gene ID: 104000550, updated on 17-Jul-2024

Summary

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Gene symbol
LOC104000550
Gene description
polygalacturonase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Musa acuminata AAA Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
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Genomic context

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See LOC104000550 in Genome Data Viewer
Location:
chromosome: BXJ1-10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ1-10 NC_088336.1 (21289819..21292825, complement)

Chromosome BXJ1-10 - NC_088336.1Genomic Context describing neighboring genes Neighboring gene adenylyl-sulfate kinase 3-like Neighboring gene uncharacterized LOC135595452 Neighboring gene DNA repair protein REV1 Neighboring gene oryzain alpha chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088336.1 Chromosome BXJ1-10 Reference Cavendish_Baxijiao_AAA

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anther dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit dehiscence IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cavendish_Baxijiao_AAA

Genomic

  1. NC_088336.1 Reference Cavendish_Baxijiao_AAA

    Range
    21289819..21292825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009422633.2 → XP_009420908.2  polygalacturonase-like

Nucleotide Protein
Heading Accession and Version

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