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LOC103995322 polygalacturonase At1g48100 [ Musa acuminata AAA Group (dessert banana) ]

Gene ID: 103995322, updated on 17-Jul-2024

Summary

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Gene symbol
LOC103995322
Gene description
polygalacturonase At1g48100
Gene type
protein coding
RefSeq status
MODEL
Organism
Musa acuminata AAA Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
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Genomic context

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See LOC103995322 in Genome Data Viewer
Location:
chromosome: BXJ1-8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ1-8 NC_088334.1 (43844759..43847536, complement)

Chromosome BXJ1-8 - NC_088334.1Genomic Context describing neighboring genes Neighboring gene probable transcription factor At5g28040 Neighboring gene neutral/alkaline invertase 1, mitochondrial-like Neighboring gene probable protein phosphatase 2C 47 Neighboring gene ubiquitin-ribosomal protein eS31 fusion protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088334.1 Chromosome BXJ1-8 Reference Cavendish_Baxijiao_AAA

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase At1g48100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cavendish_Baxijiao_AAA

Genomic

  1. NC_088334.1 Reference Cavendish_Baxijiao_AAA

    Range
    43844759..43847536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009415886.3 → XP_009414161.2  polygalacturonase At1g48100 isoform X2

  2. XM_009415885.3 → XP_009414160.2  polygalacturonase At1g48100 isoform X1

Nucleotide Protein
Heading Accession and Version

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