U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103987501 sucrose synthase 2 [ Musa acuminata AAA Group (dessert banana) ]

Gene ID: 103987501, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC103987501
Gene description
sucrose synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Musa acuminata AAA Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103987501 in Genome Data Viewer
Location:
chromosome: BXJ1-6
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ1-6 NC_088332.1 (9467464..9473177, complement)

Chromosome BXJ1-6 - NC_088332.1Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B-like Neighboring gene ethylene-responsive transcription factor 1 Neighboring gene small ribosomal subunit protein eS27w-like Neighboring gene chalcone synthase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_088332.1 Chromosome BXJ1-6 Reference Cavendish_Baxijiao_AAA

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4. Li CY, et al. BMC Genomics, 2012 Aug 5. PMID 22863187, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cavendish_Baxijiao_AAA

Genomic

  1. NC_088332.1 Reference Cavendish_Baxijiao_AAA

    Range
    9467464..9473177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009405826.3 → XP_009404101.1  sucrose synthase 2

    See identical proteins and their annotated locations for XP_009404101.1

    UniProtKB/TrEMBL
    A0A804JFG7, G3FD94
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 812
    PLN00142; sucrose synthase

  2. XM_009405825.3 → XP_009404100.1  sucrose synthase 2

    See identical proteins and their annotated locations for XP_009404100.1

    UniProtKB/TrEMBL
    A0A804JFG7, G3FD94
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 812
    PLN00142; sucrose synthase

  3. XM_065186936.1 → XP_065043008.1  sucrose synthase 2

    UniProtKB/TrEMBL
    A0A804JFG7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases