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LOC103986233 alpha-L-arabinofuranosidase 1 [ Musa acuminata AAA Group (dessert banana) ]

Gene ID: 103986233, updated on 17-Jul-2024

Summary

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Gene symbol
LOC103986233
Gene description
alpha-L-arabinofuranosidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Musa acuminata AAA Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
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Genomic context

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See LOC103986233 in Genome Data Viewer
Location:
chromosome: BXJ3-5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ3-5 NC_088353.1 (43895719..43911513, complement)

Chromosome BXJ3-5 - NC_088353.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135638478 Neighboring gene calmodulin Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like Neighboring gene uncharacterized LOC135638593

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088353.1 Chromosome BXJ3-5 Reference Cavendish_Baxijiao_AAA

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4. Li CY, et al. BMC Genomics, 2012 Aug 5. PMID 22863187, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cavendish_Baxijiao_AAA

Genomic

  1. NC_088353.1 Reference Cavendish_Baxijiao_AAA

    Range
    43895719..43911513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065151166.1 → XP_065007238.1  alpha-L-arabinofuranosidase 1 isoform X2

  2. XM_009404175.3 → XP_009402450.2  alpha-L-arabinofuranosidase 1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases