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LOC103972172 probable beta-1,4-xylosyltransferase IRX9H [ Musa acuminata AAA Group (dessert banana) ]

Gene ID: 103972172, updated on 17-Jul-2024

Summary

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Gene symbol
LOC103972172
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Musa acuminata AAA Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
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Genomic context

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See LOC103972172 in Genome Data Viewer
Location:
chromosome: BXJ2-11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ2-11 NC_088348.1 (31237793..31241400, complement)

Chromosome BXJ2-11 - NC_088348.1Genomic Context describing neighboring genes Neighboring gene chorismate synthase, chloroplastic-like Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1 Neighboring gene uncharacterized LOC103972173 Neighboring gene expansin-A8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_088348.1 Chromosome BXJ2-11 Reference Cavendish_Baxijiao_AAA

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4. Li CY, et al. BMC Genomics, 2012 Aug 5. PMID 22863187, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cavendish_Baxijiao_AAA

Genomic

  1. NC_088348.1 Reference Cavendish_Baxijiao_AAA

    Range
    31237793..31241400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009386395.3 → XP_009384670.2  probable beta-1,4-xylosyltransferase IRX9H

Nucleotide Protein
Heading Accession and Version

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