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CHRNA1 cholinergic receptor nicotinic alpha 1 subunit [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103924132, updated on 3-Aug-2024

Summary

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Gene symbol
CHRNA1
Gene description
cholinergic receptor nicotinic alpha 1 subunit
Locus tag
AS28_03353
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
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Genomic context

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See CHRNA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824035.1 (9269385..9278877)

NW_008824035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103924105 Neighboring gene activating transcription factor 2 Neighboring gene chimerin 1 Neighboring gene G protein-coupled receptor 155 Neighboring gene secernin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008824035.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha
Names
Acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824035.1 Reference ASM69910v1 Primary Assembly

    Range
    9269385..9278877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009332599.1 → XP_009330874.1  acetylcholine receptor subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_009330874.1

    UniProtKB/TrEMBL
    A0A093QT17
    Conserved Domains (3) summary
    TIGR00860
    Location:21 → 451
    LIC; Cation transporter family protein
    pfam02931
    Location:23 → 235
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:242 → 450
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_009332610.1 → XP_009330885.1  acetylcholine receptor subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_009330885.1

    UniProtKB/TrEMBL
    A0A093QT17
    Conserved Domains (3) summary
    TIGR00860
    Location:21 → 446
    LIC; Cation transporter family protein
    pfam02931
    Location:23 → 230
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:237 → 445
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
Nucleotide Protein
Heading Accession and Version

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