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ccpg1 cell cycle progression 1 [ Danio rerio (zebrafish) ]

Gene ID: 103908643, updated on 11-Mar-2024

Summary

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Official Symbol
ccpg1provided by ZNC
Official Full Name
cell cycle progression 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-136
See related
Ensembl:ENSDARG00000102110 AllianceGenome:ZFIN:ZDB-GENE-041114-136
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101711
Summary
Predicted to be involved in regulation of Rho guanyl-nucleotide exchange factor activity. Predicted to be active in membrane. Orthologous to human CCPG1 (cell cycle progression 1). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See ccpg1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (2189211..2203305)
106 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003336845.1 (3496..13771, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (2902178..2910737)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 4 Neighboring gene uncharacterized LOC103909107 Neighboring gene piercer of microtubule wall 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class B Neighboring gene PIGB opposite strand 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish orthologue of the dyslexia candidate gene DYX1C1 is essential for cilia growth and function. Chandrasekar G, et al. PLoS One, 2013. PMID 23650548, Free PMC Article
  2. Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes. Cañestro C, et al. PLoS Genet, 2009 May. PMID 19478994, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC101711

General protein information

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Preferred Names
cell cycle progression protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351662.1 → NP_001338591.1  cell cycle progression protein 1

    Status: VALIDATED

    Source sequence(s)
    CABZ01075070, GFIL01018649
    UniProtKB/TrEMBL
    A0A8M1PAI3
    Related
    ENSDARP00000130348.2, ENSDART00000162748.2
    Conserved Domains (1) summary
    cl25732
    Location:266 → 518
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    2189211..2203305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 Primary Assembly

Genomic

  1. NW_003336845.1 Reference GRCz11 Primary Assembly

    Range
    3496..13771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001007426.1: Suppressed sequence

    Description
    NM_001007426.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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