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CSPG5 chondroitin sulfate proteoglycan 5 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103903277, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794177.1 (392474..397278, complement)

NW_008794177.1Genomic Context describing neighboring genes Neighboring gene SREBF chaperone Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene KAT8 regulatory NSL complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008794177.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008794177.1 Reference ASM69914v1

    Range
    392474..397278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009284454.2 → XP_009282729.1  chondroitin sulfate proteoglycan 5

    Conserved Domains (1) summary
    pfam06567
    Location:26 → 116
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
Nucleotide Protein
Heading Accession and Version

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