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HS6ST1 heparan sulfate 6-O-sulfotransferase 1 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103903145, updated on 3-Aug-2024

Summary

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Gene symbol
HS6ST1
Gene description
heparan sulfate 6-O-sulfotransferase 1
Locus tag
AS27_07704
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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See HS6ST1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795907.1 (3005517..3147126)

NW_008795907.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 168 member B Neighboring gene pleckstrin homology domain containing B2 Neighboring gene UDP-glucose glycoprotein glucosyltransferase 1 Neighboring gene Sin3A associated protein 130

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795907.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1
Names
Heparan-sulfate 6-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795907.1 Reference ASM69914v1

    Range
    3005517..3147126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009284284.1 → XP_009282559.1  heparan-sulfate 6-O-sulfotransferase 1

    Conserved Domains (1) summary
    cl22970
    Location:61 → 248
    Sulfotransfer_2; Sulfotransferase family

RNA

  1. XR_002086264.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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