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RXYLT1 ribitol xylosyltransferase 1 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103900416, updated on 3-Aug-2024

Summary

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Gene symbol
RXYLT1
Gene description
ribitol xylosyltransferase 1
Locus tag
AS27_10049
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Also known as
TMEM5
Orthologs
human mouse all
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Genomic context

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See RXYLT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795442.1 (2259050..2278870)

NW_008795442.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1H Neighboring gene arginine vasopressin receptor 1A Neighboring gene SLIT-ROBO Rho GTPase activating protein 1 Neighboring gene KICSTOR subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795442.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribitol beta-1,4-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795442.1 Reference ASM69914v1

    Range
    2259050..2278870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009281091.1 → XP_009279366.1  transmembrane protein 5 isoform X1

    See identical proteins and their annotated locations for XP_009279366.1

    UniProtKB/TrEMBL
    A0A087R5K1
    Conserved Domains (1) summary
    TIGR00570
    Location:307 → 357
    cdk7; CDK-activating kinase assembly factor MAT1

  2. XM_009281095.1 → XP_009279370.1  transmembrane protein 5 isoform X2

    See identical proteins and their annotated locations for XP_009279370.1

  3. XM_009281092.2 → XP_009279367.1  transmembrane protein 5 isoform X1

    See identical proteins and their annotated locations for XP_009279367.1

    UniProtKB/TrEMBL
    A0A087R5K1
    Conserved Domains (1) summary
    TIGR00570
    Location:307 → 357
    cdk7; CDK-activating kinase assembly factor MAT1

  4. XM_009281096.1 → XP_009279371.1  transmembrane protein 5 isoform X3

  5. XM_009281093.1 → XP_009279368.1  transmembrane protein 5 isoform X2

    See identical proteins and their annotated locations for XP_009279368.1

  6. XM_009281097.1 → XP_009279372.1  transmembrane protein 5 isoform X4

    See identical proteins and their annotated locations for XP_009279372.1

    Conserved Domains (1) summary
    TIGR00570
    Location:206 → 256
    cdk7; CDK-activating kinase assembly factor MAT1
Nucleotide Protein
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