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PKD1L2 polycystin-1-like protein 2 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103897343, updated on 3-Aug-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
43
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795126.1 (3854861..3901685)

NW_008795126.1Genomic Context describing neighboring genes Neighboring gene gigaxonin Neighboring gene beta-carotene oxygenase 1 Neighboring gene glycine cleavage system protein H Neighboring gene uncharacterized protein C16orf46 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795126.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795126.1 Reference ASM69914v1

    Range
    3854861..3901685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009277338.1 → XP_009275613.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2

    Conserved Domains (6) summary
    cd00037
    Location:68 → 185
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    smart00303
    Location:1324 → 1373
    GPS; G-protein-coupled receptor proteolytic site domain
    cd01752
    Location:1436 → 1555
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:623 → 943
    REJ; REJ domain
    pfam02140
    Location:201 → 282
    Gal_Lectin; Galactose binding lectin domain
    pfam08016
    Location:2046 → 2466
    PKD_channel; Polycystin cation channel
Nucleotide Protein
Heading Accession and Version

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