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SMPD3 sphingomyelin phosphodiesterase 3 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103896828, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
Locus tag
AS27_09156
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795037.1 (6721113..6754617)

NW_008795037.1Genomic Context describing neighboring genes Neighboring gene leukotriene B4 receptor 1 Neighboring gene phospholipase A2 group XV Neighboring gene protein arginine methyltransferase 7 Neighboring gene solute carrier family 7 member 6 opposite strand

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795037.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795037.1 Reference ASM69914v1

    Range
    6721113..6754617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009276740.1 → XP_009275015.1  sphingomyelin phosphodiesterase 3

    See identical proteins and their annotated locations for XP_009275015.1

    UniProtKB/TrEMBL
    A0A087QX74
    Conserved Domains (1) summary
    cd09078
    Location:345 → 653
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein
Heading Accession and Version

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