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CHID1 chitinase domain containing 1 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103896220, updated on 3-Aug-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
Locus tag
AS27_03638
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795027.1 (1931438..2068206, complement)

NW_008795027.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene tetraspanin 4 Neighboring gene adaptor related protein complex 2 subunit alpha 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008795027.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1
Names
Chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795027.1 Reference ASM69914v1

    Range
    1931438..2068206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009276021.1 → XP_009274296.1  chitinase domain-containing protein 1

    UniProtKB/TrEMBL
    A0A087QVS7
    Conserved Domains (2) summary
    cd02876
    Location:91 → 407
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    smart00636
    Location:95 → 398
    Glyco_18; Glyco_18 domain
Nucleotide Protein
Heading Accession and Version

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