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GPC2 glypican 2 [ Papio anubis (olive baboon) ]

Gene ID: 103881637, updated on 11-Mar-2024

Summary

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Gene symbol
GPC2
Gene description
glypican 2
See related
Ensembl:ENSPANG00000018038
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See GPC2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 4 NC_044979.1 (139793774..139801100)
103 previous assembly Panu_3.0 (GCF_000264685.3) Unplaced Scaffold NW_018813241.1 (1..1451)

Chromosome 4 - NC_044979.1Genomic Context describing neighboring genes Neighboring gene paired immunoglobin like type 2 receptor beta Neighboring gene PVR related immunoglobulin domain containing Neighboring gene STAG3 cohesin complex component Neighboring gene galactose-3-O-sulfotransferase 4 Neighboring gene trafficking protein particle complex subunit 14 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044979.1 Reference Panubis1.0 Primary Assembly

    Range
    139793774..139801100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031665556.1 → XP_031521416.1  glypican-2

    UniProtKB/TrEMBL
    A0A096MVK5
    Related
    ENSPANP00000003884.3, ENSPANT00000000535.3
    Conserved Domains (1) summary
    pfam01153
    Location:29 → 511
    Glypican
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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