U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103875023 exopolygalacturonase [ Brassica rapa (field mustard) ]

Gene ID: 103875023, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103875023
Gene description
exopolygalacturonase
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103875023 in Genome Data Viewer
Location:
chromosome: A6
Exon count:
5
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A06 NC_024800.2 (23698435..23701898, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (21511801..21513543)

Chromosome A06 - NC_024800.2Genomic Context describing neighboring genes Neighboring gene probable polygalacturonase Neighboring gene uncharacterized LOC103875024 Neighboring gene sucrose synthase 2 Neighboring gene uncharacterized LOC103875020

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
exopolygalacturonase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024800.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    23698435..23701898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009153468.3 → XP_009151716.1  exopolygalacturonase

    See identical proteins and their annotated locations for XP_009151716.1

    UniProtKB/TrEMBL
    A0A397Z2B9, A0A3P5YKK8, M4F8L9
    Conserved Domains (1) summary
    cl19188
    Location:49 → 388
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases