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LOC103859243 polygalacturonase [ Brassica rapa (field mustard) ]

Gene ID: 103859243, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103859243
Gene description
polygalacturonase
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
MF9
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Genomic context

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See LOC103859243 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
3
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (16539881..16541483, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (15584229..15585801, complement)

Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene thymidine kinase a Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene polygalacturonase Neighboring gene exopolygalacturonase clone GBGA483

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    16539881..16541483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009136748.3 → XP_009134996.1  polygalacturonase

    See identical proteins and their annotated locations for XP_009134996.1

    UniProtKB/TrEMBL
    A0A398A6J8, B3EZF0, M4CAN9
    Conserved Domains (1) summary
    cl19188
    Location:33 → 386
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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