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LOC103855615 cytochrome P450 708A2 [ Brassica rapa (field mustard) ]

Gene ID: 103855615, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103855615
Gene description
cytochrome P450 708A2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103855615 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
8
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (902190..906560)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (891442..895477)

Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein GIS Neighboring gene uncharacterized LOC103855613 Neighboring gene probable mediator of RNA polymerase II transcription subunit 26b Neighboring gene uncharacterized LOC117133082 Neighboring gene autophagy-related protein 18e Neighboring gene cellulose synthase A catalytic subunit 3 [UDP-forming]

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 708A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    902190..906560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009132620.3 → XP_009130868.1  cytochrome P450 708A2

    UniProtKB/TrEMBL
    A0A397ZRA4, A0A397ZX51
    Conserved Domains (1) summary
    cl12078
    Location:33 → 377
    p450; Cytochrome P450

RNA

  1. XR_004456914.1 RNA Sequence

  2. XR_004456915.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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