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LOC103846383 probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 [ Brassica rapa (field mustard) ]

Gene ID: 103846383, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103846383
Gene description
probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103846383 in Genome Data Viewer
Location:
chromosome: A10
Exon count:
11
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A10 NC_024804.2 (16403054..16406216, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A10 NC_024804.1 (13334750..13337878, complement)

Chromosome A10 - NC_024804.2Genomic Context describing neighboring genes Neighboring gene basic leucine zipper 43 Neighboring gene probable E3 ubiquitin-protein ligase RHC2A Neighboring gene uncharacterized LOC103846384 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA N2-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA (guanine(26)-N(2))-dimethyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024804.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    16403054..16406216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009123295.3 → XP_009121543.1  probable tRNA (guanine(26)-N(2))-dimethyltransferase 1

    UniProtKB/TrEMBL
    A0A397XLR2, A0A3P6D0I3
    Conserved Domains (1) summary
    cl17173
    Location:11 → 462
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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