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LOC103837643 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [ Brassica rapa (field mustard) ]

Gene ID: 103837643, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103837643
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103837643 in Genome Data Viewer
Location:
chromosome: A9
Exon count:
3
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (5672006..5673769, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (3954612..3956325)

Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103837645 Neighboring gene glutathione S-transferase F14 Neighboring gene uncharacterized LOC103837642 Neighboring gene serine--glyoxylate aminotransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    5672006..5673769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009113998.3 → XP_009112246.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for XP_009112246.1

    UniProtKB/TrEMBL
    A0A3P5XWJ9, M4F7Z4
    Conserved Domains (1) summary
    pfam04724
    Location:8 → 362
    Glyco_transf_17; Glycosyltransferase family 17

  2. XM_033278248.1 → XP_033134139.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A3P5XWJ9, M4F7Z4
    Conserved Domains (1) summary
    pfam04724
    Location:8 → 362
    Glyco_transf_17; Glycosyltransferase family 17

  3. XM_009113999.3 → XP_009112247.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for XP_009112247.1

    UniProtKB/TrEMBL
    A0A3P5XWJ9, M4F7Z4
    Conserved Domains (1) summary
    pfam04724
    Location:8 → 362
    Glyco_transf_17; Glycosyltransferase family 17

  4. XM_033278249.1 → XP_033134140.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A3P5XWJ9, M4F7Z4
    Conserved Domains (1) summary
    pfam04724
    Location:8 → 362
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
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