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LOC103836643 exopolygalacturonase clone GBGE184-like [ Brassica rapa (field mustard) ]

Gene ID: 103836643, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103836643
Gene description
exopolygalacturonase clone GBGE184-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103836643 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
4
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A08 NC_024802.2 (22807234..22809167)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A8 NC_024802.1 (21533478..21535328)

Chromosome A08 - NC_024802.2Genomic Context describing neighboring genes Neighboring gene thiamine pyrophosphokinase 1 Neighboring gene probable pectinesterase/pectinesterase inhibitor 7 Neighboring gene 60S ribosomal protein L19-1 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase clone GBGE184-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024802.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    22807234..22809167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009112935.3 → XP_009111183.1  exopolygalacturonase clone GBGE184-like

    See identical proteins and their annotated locations for XP_009111183.1

    UniProtKB/TrEMBL
    A0A397YNY5, M4ENZ0
    Conserved Domains (1) summary
    cl19188
    Location:20 → 419
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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