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LOC103835323 exopolygalacturonase clone GBGE184 [ Brassica rapa (field mustard) ]

Gene ID: 103835323, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103835323
Gene description
exopolygalacturonase clone GBGE184
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Also known as
MF2
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Genomic context

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See LOC103835323 in Genome Data Viewer
Location:
chromosome: A8
Exon count:
4
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A08 NC_024802.2 (17748325..17750087, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A8 NC_024802.1 (16897849..16899524, complement)

Chromosome A08 - NC_024802.2Genomic Context describing neighboring genes Neighboring gene putative F-box protein At1g50870 Neighboring gene exopolygalacturonase clone GBGE184 Neighboring gene uncharacterized LOC103835324 Neighboring gene uncharacterized LOC117127423

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase clone GBGE184
Names
pollen-specific polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024802.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    17748325..17750087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009111476.3 → XP_009109724.1  exopolygalacturonase clone GBGE184

    See identical proteins and their annotated locations for XP_009109724.1

    UniProtKB/TrEMBL
    A0A397YCZ8, A8VPP7, M4D319, M4D320
    Conserved Domains (1) summary
    cl19188
    Location:21 → 420
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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