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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Serinus canaria (Common canary) ]

Gene ID: 103827065, updated on 10-Oct-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
See related
EnsemblRapid:ENSSCAG00000008948
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 1 NC_066313.1 (20273619..20440798, complement)

Chromosome 1 - NC_066313.1Genomic Context describing neighboring genes Neighboring gene listerin E3 ubiquitin protein ligase 1 Neighboring gene RWD domain containing 2B Neighboring gene ubiquitin specific peptidase 16 Neighboring gene collagen type VIII alpha 1 chain Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066313.1 Chromosome 1 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066313.1 Reference serCan2020 Primary Assembly

    Range
    20273619..20440798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050976379.1 → XP_050832336.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X6

  2. XM_050976337.1 → XP_050832294.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  3. XM_050976342.1 → XP_050832299.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  4. XM_050976344.1 → XP_050832301.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  5. XM_050976380.1 → XP_050832337.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X7

    Related
    ENSSCAP00000011966.2, ENSSCAT00000013478.2

  6. XM_050976336.1 → XP_050832293.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4
    Related
    ENSSCAP00000011982.1, ENSSCAT00000013495.2

  7. XM_050976354.1 → XP_050832311.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  8. XM_050976358.1 → XP_050832315.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  9. XM_050976395.1 → XP_050832352.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  10. XM_050976386.1 → XP_050832343.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X7

  11. XM_050976364.1 → XP_050832321.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C9N0J4

  12. XM_050976367.1 → XP_050832324.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

  13. XM_050976392.1 → XP_050832349.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X8

  14. XM_050976370.1 → XP_050832327.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

  15. XM_030235196.2 → XP_030091056.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C9N472
    Related
    ENSSCAP00000011974.2, ENSSCAT00000013487.2
    Conserved Domains (1) summary
    pfam00777
    Location:151 → 369
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  16. XM_050976372.1 → XP_050832329.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

  17. XM_050976399.1 → XP_050832356.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X9

RNA

  1. XR_007777905.1 RNA Sequence

  2. XR_007777904.1 RNA Sequence

  3. XR_007777913.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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