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SELE selectin E [ Serinus canaria (Common canary) ]

Gene ID: 103823401, updated on 12-Aug-2024

Summary

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Gene symbol
SELE
Gene description
selectin E
See related
EnsemblRapid:ENSSCAG00000002401
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See SELE in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 8 NC_066322.1 (27999953..28007787)

Chromosome 8 - NC_066322.1Genomic Context describing neighboring genes Neighboring gene 14 kDa phosphohistidine phosphatase Neighboring gene methyltransferase 18, RPL3 N3(tau)-histidine Neighboring gene retinoid X receptor gamma Neighboring gene LIM homeobox transcription factor 1 alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066322.1 Chromosome 8 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E-selectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066322.1 Reference serCan2020 Primary Assembly

    Range
    27999953..28007787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050977688.1 → XP_050833645.1  E-selectin isoform X1

    Related
    ENSSCAP00000002762.2, ENSSCAT00000003269.2

  2. XM_050977689.1 → XP_050833646.1  E-selectin isoform X2

    UniProtKB/TrEMBL
    A0A8C9MFP4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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