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POFUT1 protein O-fucosyltransferase 1 [ Serinus canaria (Common canary) ]

Gene ID: 103818664, updated on 12-Aug-2024

Summary

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Gene symbol
POFUT1
Gene description
protein O-fucosyltransferase 1
See related
EnsemblRapid:ENSSCAG00000014245
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See POFUT1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 20 NC_066333.1 (7495485..7500771, complement)

Chromosome 20 - NC_066333.1Genomic Context describing neighboring genes Neighboring gene ASXL transcriptional regulator 1 Neighboring gene kinesin family member 3B Neighboring gene PLAG1 like zinc finger 2 Neighboring gene transmembrane 9 superfamily member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066333.1 Chromosome 20 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066333.1 Reference serCan2020 Primary Assembly

    Range
    7495485..7500771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009093029.4 → XP_009091277.1  GDP-fucose protein O-fucosyltransferase 1

    UniProtKB/TrEMBL
    A0A8C9NKP0
    Related
    ENSSCAP00000019730.1, ENSSCAT00000022037.2
    Conserved Domains (1) summary
    cd11302
    Location:42 → 391
    O-FucT-1; GDP-fucose protein O-fucosyltransferase 1
Nucleotide Protein
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