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SLC3A1 solute carrier family 3 member 1 [ Serinus canaria (Common canary) ]

Gene ID: 103817116, updated on 12-Aug-2024

Summary

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Gene symbol
SLC3A1
Gene description
solute carrier family 3 member 1
See related
EnsemblRapid:ENSSCAG00000010427
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See SLC3A1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 3 NC_066316.1 (25995888..26009643)

Chromosome 3 - NC_066316.1Genomic Context describing neighboring genes Neighboring gene leucine rich pentatricopeptide repeat containing Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1B Neighboring gene prolyl endopeptidase like Neighboring gene calmodulin-lysine N-methyltransferase Neighboring gene SIX homeobox 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066316.1 Chromosome 3 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral and basic amino acid transport protein rBAT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066316.1 Reference serCan2020 Primary Assembly

    Range
    25995888..26009643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009091221.4 → XP_009089469.2  neutral and basic amino acid transport protein rBAT

    UniProtKB/TrEMBL
    A0A8C9N565
    Related
    ENSSCAP00000014166.1, ENSSCAT00000015893.2
    Conserved Domains (2) summary
    cd11359
    Location:136 → 583
    AmyAc_SLC3A1; Alpha amylase catalytic domain found in Solute Carrier family 3 member 1 proteins
    pfam16028
    Location:85 → 143
    SLC3A2_N; Solute carrier family 3 member 2 N-terminus
Nucleotide Protein
Heading Accession and Version

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