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HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 [ Serinus canaria (Common canary) ]

Gene ID: 103813888, updated on 12-Aug-2024

Summary

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Gene symbol
HOGA1
Gene description
4-hydroxy-2-oxoglutarate aldolase 1
See related
EnsemblRapid:ENSSCAG00000016653
Gene type
protein coding
RefSeq status
MODEL
Organism
Serinus canaria
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
Orthologs
human mouse all
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Genomic context

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See HOGA1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current serCan2020 (GCF_022539315.1) 6 NC_066320.1 (21318416..21321383, complement)

Chromosome 6 - NC_066320.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase type 2 alpha Neighboring gene MORN repeat containing 4 Neighboring gene ankyrin repeat domain 2 Neighboring gene ubiquitin domain containing 1 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066320.1 Chromosome 6 Reference serCan2020 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-hydroxy-2-oxoglutarate aldolase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference serCan2020 Primary Assembly

Genomic

  1. NC_066320.1 Reference serCan2020 Primary Assembly

    Range
    21318416..21321383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009087258.4 → XP_009085506.2  4-hydroxy-2-oxoglutarate aldolase, mitochondrial

    UniProtKB/TrEMBL
    A0A8C9NTI3
    Related
    ENSSCAP00000023224.2, ENSSCAT00000025865.2
    Conserved Domains (1) summary
    cd00408
    Location:44 → 324
    DHDPS-like; Dihydrodipicolinate synthase family
Nucleotide Protein
Heading Accession and Version

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