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AGRN agrin [ Acanthisitta chloris (rifleman) ]

Gene ID: 103811278, updated on 3-Aug-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
Locus tag
N310_04277
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008656293.1 (366..26110)

NW_008656293.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008656293.1 Unplaced Scaffold Reference ASM69581v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008656293.1 Reference ASM69581v1

    Range
    366..26110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009084241.1 → XP_009082489.1  agrin

    UniProtKB/TrEMBL
    A0A091MIF8
    Conserved Domains (7) summary
    smart00280
    Location:36 → 82
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:475 → 599
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00054
    Location:1168 → 1198
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:719 → 869
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:896 → 927
    EGF; EGF-like domain
    pfam00053
    Location:124 → 175
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:1010 → 1145
    Laminin_G_1; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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