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SGPP2 sphingosine-1-phosphate phosphatase 2 [ Acanthisitta chloris (rifleman) ]

Gene ID: 103801979, updated on 3-Aug-2024

Summary

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Gene symbol
SGPP2
Gene description
sphingosine-1-phosphate phosphatase 2
Locus tag
N310_01670
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SGPP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008672173.1 (40818..60402, complement)

NW_008672173.1Genomic Context describing neighboring genes Neighboring gene phenylalanyl-tRNA synthetase subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008672173.1 Unplaced Scaffold Reference ASM69581v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008672173.1 Reference ASM69581v1

    Range
    40818..60402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009074417.1 → XP_009072665.1  sphingosine-1-phosphate phosphatase 2

    See identical proteins and their annotated locations for XP_009072665.1

    UniProtKB/TrEMBL
    A0A091NKJ3
    Conserved Domains (2) summary
    COG0671
    Location:86 → 171
    PgpB; Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]
    cd03388
    Location:11 → 160
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...
Nucleotide Protein
Heading Accession and Version

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