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GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 103795439, updated on 10-Oct-2024

Summary

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Gene symbol
GBGT1
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
See related
Ensembl:ENSCJAG00000018000
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See GBGT1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (178782326..178793983, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (179990420..180002080, complement)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene bile salt-activated lipase-like Neighboring gene carboxyl ester lipase Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase Neighboring gene surfeit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    178782326..178793983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009004778.4 → XP_009003026.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F4VSM8, F7H240
    Related
    ENSCJAP00000044084.1
    Conserved Domains (1) summary
    cl11394
    Location:47 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_009004775.2 → XP_009003023.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F4VSM8
    Conserved Domains (1) summary
    cl11394
    Location:48 → 335
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_035261751.2 → XP_035117642.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X4

    Conserved Domains (1) summary
    cl11394
    Location:58 → 302
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_009004770.3 → XP_009003018.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_009003018.1

    UniProtKB/TrEMBL
    A0A5F4VSM8, F6R2J3
    Related
    ENSCJAP00000033234.2
    Conserved Domains (1) summary
    cl11394
    Location:60 → 347
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_054237615.1 → XP_054093590.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    F6R2J3

  6. XM_035261761.2 → XP_035117652.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X5

    Conserved Domains (1) summary
    cl11394
    Location:1 → 211
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_054237628.1 → XP_054093603.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X5

Nucleotide Protein
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