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SYNJ2 synaptojanin 2 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 103786614, updated on 6-Jun-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
See related
Ensembl:ENSPPAG00000028831
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 5 NC_073254.2 (178095787..178228422)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 6 NC_073255.1 (175999205..176128735)

Chromosome 5 - NC_073254.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134730525 Neighboring gene U2 spliceosomal RNA Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5 Neighboring gene signal recognition particle subunit SRP72-like Neighboring gene TUB like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073254.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    178095787..178228422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034963149.3 → XP_034819040.2  synaptojanin-2 isoform X7

    UniProtKB/TrEMBL
    A0A2R9A254

  2. XM_055114279.2 → XP_054970254.1  synaptojanin-2 isoform X9

    UniProtKB/TrEMBL
    A0A2R9A254

  3. XM_034963144.3 → XP_034819035.2  synaptojanin-2 isoform X1

    UniProtKB/TrEMBL
    A0A2R9A254

  4. XM_014345522.4 → XP_014201008.2  synaptojanin-2 isoform X2

    UniProtKB/TrEMBL
    A0A2R9A254
    Conserved Domains (4) summary
    PHA03247
    Location:1035 → 1362
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:13 → 485
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam08952
    Location:872 → 1008
    DUF1866; Domain of unknown function (DUF1866)
    cl00490
    Location:530 → 861
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  5. XM_034963148.3 → XP_034819039.2  synaptojanin-2 isoform X5

    UniProtKB/TrEMBL
    A0A2R9A254

  6. XM_055114278.2 → XP_054970253.1  synaptojanin-2 isoform X8

    UniProtKB/TrEMBL
    A0A2R9A254

  7. XM_063605048.1 → XP_063461118.1  synaptojanin-2 isoform X6

    UniProtKB/TrEMBL
    A0A2R9A254

  8. XM_034963145.3 → XP_034819036.2  synaptojanin-2 isoform X3

    UniProtKB/TrEMBL
    A0A2R9A254

  9. XM_034963146.3 → XP_034819037.2  synaptojanin-2 isoform X4

    UniProtKB/TrEMBL
    A0A2R9A254
Nucleotide Protein
Heading Accession and Version

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