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LOC103785254 sialic acid-binding Ig-like lectin 8 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 103785254, updated on 8-Mar-2024

Summary

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Gene symbol
LOC103785254
Gene description
sialic acid-binding Ig-like lectin 8
See related
Ensembl:ENSPPAG00000038718
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
SIGLEC8
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Genomic context

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See LOC103785254 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 20 NC_073269.2 (57495514..57502991, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 19 NC_073268.1 (59416971..59424449, complement)

Chromosome 20 - NC_073269.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106634130 Neighboring gene sialic acid binding Ig like lectin 10 Neighboring gene sialic acid-binding Ig-like lectin 13 Neighboring gene CEA cell adhesion molecule 18 Neighboring gene sialic acid binding Ig like lectin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sialic acid-binding Ig-like lectin 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073269.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    57495514..57502991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034945105.3 → XP_034800996.1  sialic acid-binding Ig-like lectin 8 isoform X2

    UniProtKB/TrEMBL
    A0A2R9BPH2, A0A2R9BPI6
    Conserved Domains (3) summary
    cd00096
    Location:175 → 180
    Ig; Ig strand A [structural motif]
    cd05712
    Location:27 → 151
    IgV_CD33; Immunoglobulin Variable (IgV) domain at the N-terminus of CD33 and related Siglecs (sialic acid-binding Ig-like lectins)
    cl11960
    Location:175 → 253
    Ig; Immunoglobulin domain

  2. XM_008966208.4 → XP_008964456.1  sialic acid-binding Ig-like lectin 8 isoform X1

    UniProtKB/TrEMBL
    A0A2R9BPG9
    Related
    ENSPPAP00000031561.1
    Conserved Domains (3) summary
    smart00408
    Location:275 → 335
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:269 → 344
    IG_like; Immunoglobulin like
    cl11960
    Location:27 → 151
    Ig; Immunoglobulin domain
Nucleotide Protein
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