U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103772535 toll-like receptor 2 type-2 [ Merops nubicus (carmine bee-eater) ]

Gene ID: 103772535, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC103772535
Gene description
toll-like receptor 2 type-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Merops nubicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coraciiformes; Meropidae; Merops
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103772535 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM69184v1 (GCF_000691845.1) Unplaced Scaffold NW_008607258.1 (4456..5733)

NW_008607258.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008607258.1 Unplaced Scaffold Reference ASM69184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Merops nubicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69184v1

Genomic

  1. NW_008607258.1 Reference ASM69184v1

    Range
    4456..5733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008939868.1 → XP_008938116.1  toll-like receptor 2 type-2

    Conserved Domains (4) summary
    cd00116
    Location:43 → 160
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:56 → 79
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:280 → 360
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:79 → 136
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases