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TERG_05978 decapping enzyme complex catalytic subunit;uncharacterized protein [ Trichophyton rubrum CBS 118892 ]

Gene ID: 10375780, updated on 31-Oct-2024

Summary

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Gene symbol
TERG_05978
Gene description
decapping enzyme complex catalytic subunit;uncharacterized protein
Locus tag
TERG_05978
See related
FungiDB:TERG_05978; VEuPathDB:TERG_05978
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trichophyton rubrum CBS 118892 (strain: CBS 118892, culture-collection: CBS:118892)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton
Orthologs
Aspergillus fumigatus all
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Genomic context

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See TERG_05978 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_003456423.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003456423.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
decapping enzyme complex catalytic subunit;uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003456423.1 Reference assembly

    Range
    1494443..1498979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047750076.1 → XP_047606756.1  uncharacterized protein TERG_05978 [Trichophyton rubrum CBS 118892]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A022W6F0, A0A080WVM5

  2. XM_003234060.2 → XP_003234108.1  decapping enzyme complex catalytic subunit [Trichophyton rubrum CBS 118892]

    See identical proteins and their annotated locations for XP_003234108.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A178EUR4, F2SSC8
    Conserved Domains (2) summary
    cd03672
    Location:97 → 248
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:10 → 94
    DCP2; Dcp2, box A domain
Nucleotide Protein
Heading Accession and Version

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