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B3gat1 beta-1,3-glucuronyltransferase 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103750906, updated on 11-Mar-2024

Summary

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Gene symbol
B3gat1
Gene description
beta-1,3-glucuronyltransferase 1
See related
Ensembl:ENSNGAG00000017136
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See B3gat1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008356058.1 (3902676..3932909, complement)

NW_008356058.1Genomic Context describing neighboring genes Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene galactosidase beta 1 like 3 Neighboring gene meiotic nuclear division protein 1 homolog pseudogene Neighboring gene small nucleolar RNA SNORA70 Neighboring gene endonuclease/exonuclease/phosphatase family domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008356058 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008356058.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3902676..3932909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008854191.1 → XP_008852413.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1

    See identical proteins and their annotated locations for XP_008852413.1

    UniProtKB/TrEMBL
    A0A8C6W8U3
    Related
    ENSNGAP00000016382.1, ENSNGAT00000021997.1
    Conserved Domains (1) summary
    pfam03360
    Location:118 → 328
    Glyco_transf_43; Glycosyltransferase family 43
Nucleotide Protein
Heading Accession and Version

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