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Galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103750603, updated on 11-Mar-2024

Summary

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Gene symbol
Galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
Ensembl:ENSNGAG00000020491
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Galnt9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008355811.1 (463287..542969)

NW_008355811.1Genomic Context describing neighboring genes Neighboring gene leucine rich colipase like 1 Neighboring gene fibrosin like 1 Neighboring gene nucleolar complex associated 4 homolog Neighboring gene DEAD-box helicase 51

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008355811 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008355811.1 Reference S.galili_v1.0 Primary Assembly

    Range
    463287..542969
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008853738.2 → XP_008851960.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RQD6
    Related
    ENSNGAP00000021253.1, ENSNGAT00000026930.1
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_008853739.2 → XP_008851961.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    Conserved Domains (2) summary
    cd02510
    Location:155 → 423
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:420 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_008853740.2 → XP_008851962.1  polypeptide N-acetylgalactosaminyltransferase 9 isoform X3

    Conserved Domains (2) summary
    pfam00652
    Location:359 → 485
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:155 → 361
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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