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Ddx23 DEAD-box helicase 23 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103750560, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx23
Gene description
DEAD-box helicase 23
See related
Ensembl:ENSNGAG00000019018
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx23 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008355797.1 (544520..559428, complement)

NW_008355797.1Genomic Context describing neighboring genes Neighboring gene sperm microtubule inner protein 11 Neighboring gene adenylate cyclase 6 Neighboring gene calcium voltage-gated channel auxiliary subunit beta 3 Neighboring gene U6 spliceosomal RNA Neighboring gene Rho family GTPase 1 Neighboring gene coiled-coil domain containing 65

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008355797 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008355797.1 Reference S.galili_v1.0 Primary Assembly

    Range
    544520..559428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008853663.2 → XP_008851885.1  probable ATP-dependent RNA helicase DDX23

    UniProtKB/TrEMBL
    A0A8C6RHM7
    Related
    ENSNGAP00000019091.1, ENSNGAT00000024750.1
    Conserved Domains (4) summary
    TIGR01622
    Location:75 → 210
    SF-CC1; splicing factor, CC1-like family
    cd18787
    Location:639 → 768
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17945
    Location:402 → 628
    DEADc_DDX23; DEAD-box helicase domain of DEAD box protein 23
    pfam17380
    Location:68 → 351
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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