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Cnot6 CCR4-NOT transcription complex subunit 6 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103749363, updated on 11-Mar-2024

Summary

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Gene symbol
Cnot6
Gene description
CCR4-NOT transcription complex subunit 6
See related
Ensembl:ENSNGAG00000008269
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Cnot6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008355162.1 (154772..229410, complement)

NW_008355162.1Genomic Context describing neighboring genes Neighboring gene fms related receptor tyrosine kinase 4 Neighboring gene secretoglobin family 3A member 1 Neighboring gene protein argonaute 14-like Neighboring gene uncharacterized LOC115067546 Neighboring gene glutamine-fructose-6-phosphate transaminase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008355162 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008355162.1 Reference S.galili_v1.0 Primary Assembly

    Range
    154772..229410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008852231.3 → XP_008850453.1  CCR4-NOT transcription complex subunit 6 isoform X3

    Conserved Domains (3) summary
    COG4886
    Location:52 → 127
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:156 → 505
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_008852230.3 → XP_008850452.1  CCR4-NOT transcription complex subunit 6 isoform X2

    Conserved Domains (3) summary
    COG4886
    Location:52 → 158
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:186 → 535
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  3. XM_008852229.3 → XP_008850451.1  CCR4-NOT transcription complex subunit 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C6QMN9
    Related
    ENSNGAP00000005743.1, ENSNGAT00000009979.1
    Conserved Domains (3) summary
    COG4886
    Location:52 → 159
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:53 → 75
    LRR_1; leucine-rich repeat [structural motif]
    cl00490
    Location:191 → 540
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  4. XM_029555613.1 → XP_029411473.1  CCR4-NOT transcription complex subunit 6 isoform X4

    Conserved Domains (3) summary
    cd10313
    Location:96 → 445
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    sd00031
    Location:4 → 26
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:3 → 44
    LRR_4; Leucine Rich repeats (2 copies)

  5. XM_029555612.1 → XP_029411472.1  CCR4-NOT transcription complex subunit 6 isoform X4

    Conserved Domains (3) summary
    cd10313
    Location:96 → 445
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    sd00031
    Location:4 → 26
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:3 → 44
    LRR_4; Leucine Rich repeats (2 copies)

  6. XM_008852232.3 → XP_008850454.1  CCR4-NOT transcription complex subunit 6 isoform X4

    Conserved Domains (3) summary
    cd10313
    Location:96 → 445
    Deadenylase_CCR4a; C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6
    sd00031
    Location:4 → 26
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:3 → 44
    LRR_4; Leucine Rich repeats (2 copies)
Nucleotide Protein
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