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Wnt5a Wnt family member 5A [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103749032, updated on 11-Mar-2024

Summary

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Gene symbol
Wnt5a
Gene description
Wnt family member 5A
See related
Ensembl:ENSNGAG00000015229
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Wnt5a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008354534.1 (3169752..3189294, complement)

NW_008354534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115067473 Neighboring gene glucose-6-phosphate isomerase-like Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene transmembrane emp24 domain-containing protein 4 pseudogene Neighboring gene torsin-1A-interacting protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008354534 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables frizzled binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Wnt-5a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008354534.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3169752..3189294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029555403.1 → XP_029411263.1  protein Wnt-5a isoform X2

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  2. XM_029555404.1 → XP_029411264.1  protein Wnt-5a isoform X2

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  3. XM_029555405.1 → XP_029411265.1  protein Wnt-5a isoform X2

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  4. XM_029555402.1 → XP_029411262.1  protein Wnt-5a isoform X2

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  5. XM_029555401.1 → XP_029411261.1  protein Wnt-5a isoform X2

    Conserved Domains (1) summary
    cd19347
    Location:49 → 360
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins

  6. XM_017802867.2 → XP_017658356.1  protein Wnt-5a isoform X1

    UniProtKB/TrEMBL
    A0A8C6R686
    Related
    ENSNGAP00000013732.1, ENSNGAT00000019314.1
    Conserved Domains (1) summary
    cd19347
    Location:69 → 380
    Wnt_Wnt5a; Wnt domain found in protein Wnt-5a and similar proteins
Nucleotide Protein
Heading Accession and Version

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