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Chst12 carbohydrate sulfotransferase 12 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103748676, updated on 11-Mar-2024

Summary

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Gene symbol
Chst12
Gene description
carbohydrate sulfotransferase 12
See related
Ensembl:ENSNGAG00000015286
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Chst12 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008354274.1 (3378028..3400024, complement)

NW_008354274.1Genomic Context describing neighboring genes Neighboring gene LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Neighboring gene galectin-related inter-fiber protein Neighboring gene kinesin-like protein KIF19 Neighboring gene eukaryotic translation initiation factor 3 subunit B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008354274 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008354274.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3378028..3400024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008851403.3 → XP_008849625.1  carbohydrate sulfotransferase 12

    See identical proteins and their annotated locations for XP_008849625.1

    UniProtKB/TrEMBL
    A0A8C6R8I4
    Related
    ENSNGAP00000013801.1, ENSNGAT00000019385.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  2. XM_008851402.3 → XP_008849624.1  carbohydrate sulfotransferase 12

    See identical proteins and their annotated locations for XP_008849624.1

    UniProtKB/TrEMBL
    A0A8C6R8I4
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family

  3. XM_017802775.2 → XP_017658264.1  carbohydrate sulfotransferase 12

    UniProtKB/TrEMBL
    A0A8C6R8I4
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 410
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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