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Pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103747148, updated on 11-Mar-2024

Summary

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Gene symbol
Pomgnt2
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
See related
Ensembl:ENSNGAG00000020861
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Pomgnt2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008352479.1 (3238891..3260752, complement)

NW_008352479.1Genomic Context describing neighboring genes Neighboring gene KRAB box domain containing 1 Neighboring gene golgi associated kinase 1A Neighboring gene SNF related kinase Neighboring gene anoctamin 10 Neighboring gene kinesin-like protein KIFC1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008352479 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008352479.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3238891..3260752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008849480.2 → XP_008847702.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_008847702.1

    UniProtKB/TrEMBL
    A0A8C6RRB0
    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)

  2. XM_008849479.2 → XP_008847701.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_008847701.1

    UniProtKB/TrEMBL
    A0A8C6RRB0
    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)

  3. XM_017802313.2 → XP_017657802.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A8C6RRB0
    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)

  4. XM_008849478.2 → XP_008847700.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_008847700.1

    UniProtKB/TrEMBL
    A0A8C6RRB0
    Related
    ENSNGAP00000021778.1, ENSNGAT00000027459.1
    Conserved Domains (2) summary
    cd00063
    Location:493 → 580
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:320 → 395
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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