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B4galt3 beta-1,4-galactosyltransferase 3 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745954, updated on 11-Mar-2024

Summary

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Gene symbol
B4galt3
Gene description
beta-1,4-galactosyltransferase 3
See related
Ensembl:ENSNGAG00000013658
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See B4galt3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350788.1 (204176..210424)

NW_008350788.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 4 Neighboring gene uncharacterized LOC115072885 Neighboring gene protoporphyrinogen oxidase Neighboring gene ubiquitin specific peptidase 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008350788 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in galactosylceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008350788.1 Reference S.galili_v1.0 Primary Assembly

    Range
    204176..210424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008847990.3 → XP_008846212.1  beta-1,4-galactosyltransferase 3

    See identical proteins and their annotated locations for XP_008846212.1

    UniProtKB/TrEMBL
    A0A8C6R2W0
    Conserved Domains (1) summary
    cd00899
    Location:125 → 344
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_029553519.1 → XP_029409379.1  beta-1,4-galactosyltransferase 3

    UniProtKB/TrEMBL
    A0A8C6R2W0
    Related
    ENSNGAP00000011543.1, ENSNGAT00000017091.1
    Conserved Domains (1) summary
    cd00899
    Location:125 → 344
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  3. XM_029553520.1 → XP_029409380.1  beta-1,4-galactosyltransferase 3

    UniProtKB/TrEMBL
    A0A8C6R2W0
    Conserved Domains (1) summary
    cd00899
    Location:125 → 344
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  4. XM_008847991.3 → XP_008846213.1  beta-1,4-galactosyltransferase 3

    See identical proteins and their annotated locations for XP_008846213.1

    UniProtKB/TrEMBL
    A0A8C6R2W0
    Conserved Domains (1) summary
    cd00899
    Location:125 → 344
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  5. XM_017801926.1 → XP_017657415.1  beta-1,4-galactosyltransferase 3

    UniProtKB/TrEMBL
    A0A8C6R2W0
    Conserved Domains (1) summary
    cd00899
    Location:125 → 344
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
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