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Pigb phosphatidylinositol glycan anchor biosynthesis class B [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745745, updated on 11-Mar-2024

Summary

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Gene symbol
Pigb
Gene description
phosphatidylinositol glycan anchor biosynthesis class B
See related
Ensembl:ENSNGAG00000017307
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Pigb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008330486.1 (2646231..2674111, complement)

NW_008330486.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 4 Neighboring gene piercer of microtubule wall 2 Neighboring gene cell cycle progression 1 Neighboring gene PIGB opposite strand 1 Neighboring gene RAB27A, member RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008330486 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI mannosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008330486.1 Reference S.galili_v1.0 Primary Assembly

    Range
    2646231..2674111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017801940.2 → XP_017657429.1  GPI mannosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RFM4
    Conserved Domains (1) summary
    pfam03901
    Location:52 → 404
    Glyco_transf_22; Alg9-like mannosyltransferase family

  2. XM_017801938.2 → XP_017657427.1  GPI mannosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RFM4
    Related
    ENSNGAP00000016671.1, ENSNGAT00000022292.1
    Conserved Domains (1) summary
    pfam03901
    Location:52 → 439
    Glyco_transf_22; Alg9-like mannosyltransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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