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LOC103745457 ATP-dependent RNA helicase A [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745457, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103745457
Gene description
ATP-dependent RNA helicase A
See related
Ensembl:ENSNGAG00000013847
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC103745457 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008350244.1 (557..14864)

NW_008350244.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008350244 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3'-5' DNA/RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008350244.1 Reference S.galili_v1.0 Primary Assembly

    Range
    557..14864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029570539.1 → XP_029426399.1  ATP-dependent RNA helicase A

    Related
    ENSNGAP00000011796.1, ENSNGAT00000017349.1
    Conserved Domains (4) summary
    COG1643
    Location:345 → 1055
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd17972
    Location:333 → 566
    DEXHc_DHX9; DEXH-box helicase domain of DEAH-box helicase 9
    cd19854
    Location:3 → 71
    DSRM_DHX9_rpt1; first double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
    cd19855
    Location:181 → 255
    DSRM_DHX9_rpt2; second double-stranded RNA binding motif of DEAH box protein 9 (DHX9) and similar proteins
Nucleotide Protein
Heading Accession and Version

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