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Ddx46 DEAD-box helicase 46 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103745031, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx46
Gene description
DEAD-box helicase 46
See related
Ensembl:ENSNGAG00000020157
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Ddx46 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008328092.1 (32015..98510)

NW_008328092.1Genomic Context describing neighboring genes Neighboring gene calcium modulating ligand Neighboring gene 60S ribosomal protein L38 pseudogene Neighboring gene chromosome unknown C5orf24 homolog Neighboring gene thioredoxin domain containing 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008328092 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX46

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008328092.1 Reference S.galili_v1.0 Primary Assembly

    Range
    32015..98510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017801888.2 → XP_017657377.1  probable ATP-dependent RNA helicase DDX46

    UniProtKB/TrEMBL
    A0A8C6RS58
    Related
    ENSNGAP00000020807.1, ENSNGAT00000026480.1
    Conserved Domains (2) summary
    COG0513
    Location:344 → 826
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17953
    Location:361 → 582
    DEADc_DDX46; DEAD-box helicase domain of DEAD box protein 46
Nucleotide Protein
Heading Accession and Version

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