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Ddx42 DEAD-box helicase 42 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103744751, updated on 11-Mar-2024

Summary

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Gene symbol
Ddx42
Gene description
DEAD-box helicase 42
See related
Ensembl:ENSNGAG00000021897
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ddx42 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008349234.1 (576564..622750, complement)

NW_008349234.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, ATPase 5 Neighboring gene FtsJ RNA 2'-O-methyltransferase 3 Neighboring gene coiled-coil domain containing 47 Neighboring gene STE20 related adaptor alpha Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008349234 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008349234.1 Reference S.galili_v1.0 Primary Assembly

    Range
    576564..622750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008846587.3 → XP_008844809.1  ATP-dependent RNA helicase DDX42 isoform X1

    See identical proteins and their annotated locations for XP_008844809.1

    UniProtKB/TrEMBL
    A0A8C6RUU5
    Related
    ENSNGAP00000023300.1, ENSNGAT00000028996.1
    Conserved Domains (2) summary
    PTZ00110
    Location:193 → 652
    PTZ00110; helicase; Provisional
    pfam12751
    Location:742 → 883
    Vac7; Vacuolar segregation subunit 7

  2. XM_017801505.2 → XP_017656994.1  ATP-dependent RNA helicase DDX42 isoform X2

    UniProtKB/TrEMBL
    A0A8C6RUU5
    Conserved Domains (2) summary
    PTZ00110
    Location:30 → 489
    PTZ00110; helicase; Provisional
    pfam12751
    Location:579 → 720
    Vac7; Vacuolar segregation subunit 7
Nucleotide Protein
Heading Accession and Version

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