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Ifih1 interferon induced with helicase C domain 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103744095, updated on 11-Mar-2024

Summary

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Gene symbol
Ifih1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSNGAG00000012752
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Ifih1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008348613.1 (3179836..3232275, complement)

NW_008348613.1Genomic Context describing neighboring genes Neighboring gene glucagon Neighboring gene fibroblast activation protein alpha Neighboring gene uncharacterized LOC103744094 Neighboring gene grancalcin Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene cell division control protein 42 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008348613 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008348613.1 Reference S.galili_v1.0 Primary Assembly

    Range
    3179836..3232275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008845759.3 → XP_008843981.1  interferon-induced helicase C domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C6QXU3, A0A8C6R0S0
    Related
    ENSNGAP00000010303.1, ENSNGAT00000015831.1
    Conserved Domains (6) summary
    cd08818
    Location:9 → 100
    CARD_MDA5_r1; Caspase activation and recruitment domain found in MDA5, first repeat
    cd15807
    Location:896 → 1010
    MDA5_C; C-terminal domain of Melanoma differentiation-associated protein 5, a cytoplasmic viral RNA receptor
    cd12090
    Location:545 → 690
    MDA5_ID; Insert domain of MDA5
    cd18802
    Location:692 → 830
    SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
    cl14633
    Location:113 → 200
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl28899
    Location:303 → 518
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

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