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Pex13 peroxisomal biogenesis factor 13 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103743244, updated on 11-Mar-2024

Summary

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Gene symbol
Pex13
Gene description
peroxisomal biogenesis factor 13
See related
Ensembl:ENSNGAG00000012683
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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See Pex13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008348076.1 (342179..363810)

NW_008348076.1Genomic Context describing neighboring genes Neighboring gene REL proto-oncogene, NF-kB subunit Neighboring gene U1 spliceosomal RNA Neighboring gene pseudouridine synthase 10 Neighboring gene UPF0184 protein C9orf16 homolog pseudogene Neighboring gene RING finger protein 11 pseudogene Neighboring gene SANT and BTB domain regulator of CSR Neighboring gene vacuolar protein sorting-associated protein 72 homolog pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008348076 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome matrix, docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of peroxisomal importomer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome biogenesis factor 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008348076.1 Reference S.galili_v1.0 Primary Assembly

    Range
    342179..363810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008844477.2 → XP_008842699.1  peroxisome biogenesis factor 13

    UniProtKB/TrEMBL
    A0A8C6W631
    Related
    ENSNGAP00000010199.1, ENSNGAT00000015723.1
    Conserved Domains (2) summary
    cd11864
    Location:276 → 333
    SH3_PEX13_eumet; Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13
    pfam04088
    Location:117 → 254
    Peroxin-13_N; Peroxin 13, N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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